ISSN 1003-8280 CN 10-1522/R 中国疾病预防控制中心 主办
Objective In order to construct fast and efficient genome sequencing platform of Banna virus (BAV), we designed specific-type sequencing primers for BAV. Methods In this study, primer design software Primer Premier v6.0 was used to design the BAV genotype A specific amplification and sequencing primers to analyze the genotype, the sequences of which were based on the information of BAV on GenBank. Meanwhile, the whole-genome sequences of type A1 and A2 of 30 strains of BAV isolated in China, were sequenced by these primers. Results Two sets of specific amplification and sequencing primers for BAV were designed, 26 pairs for gene A1 subtype, and 30 pairs for gene A2 subtype. Moreover, the whole-genome sequences of 30 strains of BAV were amplified. Conclusion Specific amplification primers of BAV with high efficiency and accuracy were designed, laying foundation for further studies on biological feature of BAV.
Objective To study species distribution, community composition and bloodsucking rate of hematophagous midges in 3 cities (countries) of China-Laos border. Methods Hematophagous midges were captured with light trap to generate data on the species distribution in China-Laos border in June to August, 2015. Results A total of 78 336 host-seeking midges belonging to 54 species and 3 genera were collected; genus Leptoconops with 4 species, genus Lasiohelea with 7 species, genus Culicoedes with 43 species. Seven species, C. gentiloides, C. huffi, C. kibabaluensis, C. lansangensis, C. parahumeralis, C. variatus, La. adita are recorded for the first time in Yunnan province. The species distribution of hematophagous midges was recorded 48 species in Mengla, 22 species in Jiangcheng, 16 species in Jinghong. The predominant species included C. jacobsoni, C. parahumeralis and C. palpifer, and their composition were 25.93%, 19.25%, and 17.13% respectively. The community composition and the bloodsucking rate of midges varied with different counties and habitats. The bloodsucking rate was 32.26% in residence district, and 28.24% in cowshed. Conclusion The investigation provides the reference for species distribution, community composition and studies of infectious disease by hematophagous Culicoides.
Objective To develop a rapid and sensitive detection method for Batai virus (BATV) based on TaqMan Real-time PCR. Methods Based on the BATV NS gene sequences of S segment published in GenBank, BATV specific primers and probe were designed. The specificity and stability of the system were evaluated. Quantitative standard curve of BATV TaqMan Real-time PCR was established. Results The specificity and stability test showed that the system is specific and the coefficient variables were all less than 2.50%. Quantitative standard curve based on the genomic copy was drawn, and the lowest detectable limit (LOD) of system is 10 copies/μl. Conclusion TaqMan Real-time PCR for BATV detection has been developed, which is more sensitive and more efficient than the general PCR.
Objective To continue the investigation on the distribution of mosquito-borne arbovirus in some areas of Hubei province. Methods Mosquitoes were collected from Enshi state, Shennongjia forest region, Jiangling county and Suizhou city in the summer of 2010. Virus was isolated from these mosquitoes by cell culture. The virus isolates were identified by serological and molecular biological methods, and phylogenetic analysis was conducted on virus genome sequences. Results 12 845 mosquitoes were collected. 38 virus strains were isolated from mosquitoes. Through serological and molecular biological identification, 32 strains were identified as Japanese encephalitis virus (JEV), 5 were Getah virus (GETV), 1 was mixed strain of JEV and GETV. Phylogenetic analysis on E sequence of JEV showed all JEV strains belonged to genotype Ⅰ JEV, and analysis on NS2 sequence of GETV showed new strains that were homogenous with strains isolated from Hebei and South Korea, but heterogeneous with strain from Russia. Conclusion GETV was firstly isolated from Hubei province, and genotype Ⅰ JEV was re-confirmed from Hubei province.
Objective To understand the species, distribution and genotype of mosquito-borne arboviruses in some regions of Henan province. Methods Mosquito samples were collected from Xixian county and Xin'an county in Henan province from May to August, 2012. After species identification, mosquitoes were inter-cells cross cultured for viral isolation. RT-PCR using specific primer for common arboviruses was used to identify the positive isolates. Molecular biological analysis were conducted by using software of Clustal X2.1, MegAlign, Genedoc 3.2 and Mega v5.1, and genotype for the virus was identified. Results A total of 7149 mosquitoes which belong to 5 species in 4 genera were collected. The predominant mosquito specie in Xin'an county was Armigeres subalbatus (2055, 51.36%), but the mainly species in Xixian county was Culex pipens pallens (2964, 94.16%). Five strains from Cx. pipens pallens and Cx. tritaeniorhynchus were identified as genotypeⅠ Japanese encephalitis virus (JEV), which caused slightly cytopathic effect (CPE) in C6/36 cells, and no CPE in BHK-21. But severe CPE was observed in BHK-21 when 3 days after inoculating the C6/36 culture of the viruses onto BHK-21 cells. Conclusion In Xixian county and Xin'an county of Henan province, b
Objective To investigate the infection with Barmah Forest virus (BFV) and Ross River virus (RRV) among arboviruses in Guizhou province, China, and to provide scientific basis for prevention and control of viral encephalitis of unknown origin. Methods BFV and RRV IgM antibodies were detected in patients with unexplained fever and viral encephalitis from 2005 to 2008 in Guizhou Province, and BFV and RRV IgG antibodies were detected in healthy persons in 2007. Results Out of the 204 cases with unexplained fever examined, 4 (1.96%) had BFV IgM antibody, and 6 (2.94%) had RRV IgM antibody. Out of the 426 cases with unexplained viral encephalitis examined, 12 (2.82%) had BFV IgM antibody, and 15 (3.52%) had RRV IgM antibody. Out of the 870 healthy persons examined, 1.49% had BFV IgG antibody, and 1.15% had RRV IgG antibody. The number of BFV/RRV IgM-positive cases and the number of counties with positive cases increased year by year from 2005 to 2008. Conclusion There might exist some diseases caused by BFV and RRV infection in Guizhou province, China, and we should strengthen monitoring and research work for the diseases caused by the two viruses.
Objective To investigate the species of mosquitoes and the distribution of arboviruses carried by the mosquitoes in Hexi Corridor of Gansu province, China in 2011. Methods Mosquito samples were collected from 6 p.m. to 6 a.m. in the next day with UV lamps. After being identified, the samples were preserved in liquid nitrogen and then transported to a laboratory for examination. Viruses were isolated from the samples by tissue culture, and the virus isolates were identified by serological and molecular biological methods. Homology and phylogenetic analysis was performed on the nucleotide sequences of isolated viruses by bioinformatics. Results A total of 24 028 mosquitoes, belonging to 6 species and 3 genera, were collected in seven counties or cities along Hexi Corridor in August 2011. Among the collected mosquitoes, Aedes vexans was the most abundant species, accounting for 32.80% (7880/24 028), and Culex pipiens pallens accounted for 30.26% (7272/24 028). One virus strain (GS11-155) that could induce pathological changes of two types of cells (BHK-21 and C6/36 cells) was isolated by cell culture. Genes of Culex flavivirus (CxFV), Liaoning virus (LNV), and Getah virus (GETV) were detected in 32 batches of mosquito samples, and in 11 of the 32 batches, 1 had CxFV, 3 had GETV, and 7 had LNV, according to nucleotide sequencing. Conclusion Ae. vexans was the dominant species of mosquitoes in Hexi Corridor of Gansu province, China. The mosquitoes in Hexi Corridor carry several types of arboviruses, including the CxFV, GETV, and LNV
Objective To investigate the species and distribution patterns of mosquito-borne arboviruses in some regions of Hubei province, China. Methods Mosquito samples were collected in Wuxue county of Huanggang city and Tongcheng county of Xianning city in the summer of 2009. Viruses were isolated from the samples by tissue culture, and the obtained virus isolates were identified by serological and molecular biological methods. Sequence homology and phylogenetic analysis was performed on the isolated viruses using bioinformatics software. Results A total of 9424 mosquitoes, belonging to 5 species and 3 genera, were collected. Four virus strains (HBTC0913, HBTC0917, HBTC0919, and HBTC0921) were isolated and identified as Banna virus (BAV). According to the phylogenetic analysis of the 12th segment of BAV, the four strains were in the same subgroup as the isolates from Beijing, Yunnan, and Inner Mongolia, China as well as Vietnam, and but in a different subgroup from the isolates from Indonesia. Compared with previous isolates, the BAV strains showed nucleotide and amino acid homologies of 87.2%-89.8% and 86.1%-90.9%, respectively, according to the homology analysis of the coding region of the 12th segment. Conclusion BAV strains were first isolated in Hubei province, China. They have a close phylogenetic association with YN6 strain isolated in Yunnan, China.
Objective To investigate the distribution profiles of arboviruses in different regions of Guizhou province, China. Methods Mosquito samples were collected using mosquito lamps in Qianxi county, Dejiang county, Rongjiang county, and Congjiang county, Guizhou province in July 2008 and then used for virus isolation by tissue culture. The obtained virus isolates were identified by serological and molecular biological methods. Homology and phylogenetic analysis were performed on viral sequences by bioinformatics. Results A total of 9160 mosquitoes (4 species, 3 genera) were collected. Out of the 9 virus strains isolated from the mosquitoes, 8 were identified as Getah virus (GETV), and 1 was identified as Japanese encephalitis virus (JEV). Compared with the prototype strain, the GETV strains had a nucleotide homology of 94.5%-94.9% and an amino acid homology of 97.4%-97.6% . The newly isolated JEV belonged to genotype Ⅰ, according to the homology and phylogenetic analysis. Conclusion GETV and genotypeⅠ JEV were first isolated from mosquitoes collected in Guizhou province, China. The GETV strains in Guizhou province have a close phylogenetic association with the strains isolated from other provinces in China, and the JEV strain in Guizhou province has a close phylogenetic association with the strains isolated from Sichuan province, China.
Objective To investigate the distribution profiles of mosquitoes and arboviruses in Xishuangbanna,Yunnan province, China, and to provide evidence for prevention and control of arbovirus diseases. Methods Mosquito samples were collected in Xishuangbanna and then used for virus isolation by cell culture. RT-PCR was used to identify arbovirus. Serum and cerebrospinal fluid samples were collected from fever patients, and the common encephalitis virus IgM antibodies were detected by ELISA. Results A total of 13 337 mosquitoes, belonging to 29 species and 5 genera, were collected. The main mosquitoes were Culex tritaeniorhynchus (79.98%, 10 667/13 337), followed by Anopheles sinensis (7.95%, 1060/13 337) and An. peditaeniatus (7.38%, 984/13 337). Several specific primers for Japanese encephalitis virus (JEV), Banna virus, alphavirus, and circovirus were used for PCR detection in 214 batches of mosquitoes, and no virus was isolated from the mosquitoes. Also, no virus was found in isolation using several types of cells. A total of 52 serum samples and 54 cerebrospinal fluid samples were collected from patients in acute stage by kits for encephalitis viruses and then subject to ELISA. There were 16 cases with JEV IgM, 4 cases with Herpes simplex virus IgM, 13 cases with mumps virus IgM, 3 cases with ECHO virus IgM, and 1 case with dengue virus IgM. Conclusion No JEV, BAV, and circovirus were detected from mosquitoes collected in Xishuangbanna,Yunnan province, China in 2011. However, serological results indicated that local fever patients were infected with several viruses such as JEV.
Objective To investigate the types and distribution profiles of arboviruses at the riverside of Yalu River in Dandong, Liaoning province, China. Methods Mosquito samples were collected with mosquito lamps and then used for virus isolation by tissue culture. The obtained virus isolates were identified by serological and molecular biological methods. Results A total of 3359 mosquitoes (3 species, 3 genera) were collected from 6 sites at the riverside of Yalu River in July 2007. Eleven virus strains were isolated from the mosquito samples. Of the 11 strains, 5 were identified as Banna Virus (BAV), 3 were identified as Orbivirus, and 3 needed further identification. Based on the results of sequence analysis, the 5 BAV strains shared high homology in terms of the 12th segment, with nucleotide and amino acid homologies of 92.1%-99.8% and 92.8%-99.5%, respectively, and were highly homologous with those from Beijing and Yunnan province, China, exhibiting nucleotide and amino acid homologies of 91.3%-98.7% and 90.8%-100%, respectively. Phylogenetic analysis showed that the 5 BAV strains and the BAV strains isolated from Beijing and Yunnan province were located in the same branch. Conclusion BAV and Orbivirus were first isolated at the riverside of Yalu River in Dandong, Liaoning province, China, and the newly isolated 5 BAV strains have a close phylogenetic association with BAV strains isolated from Beijing and Yunnan province, China.
Objective To grasp the genotypic characteristics of Japanese encephalitis virus (JEV) in Shanghai, China. Methods Mosquito samples were collected from two pig farms in Fengxian county in Shanghai from 2002 to 2005. Viruses were isolated from ground samples and then identified by cytological, zoological, serological, and molecular biological methods. The whole genomes of viruses were sequenced. Sequence splicing, sequence alignment, nucleotide and amino acid homology analysis, and phylogenetic analysis were performed with biological softwares, such as ATGC, Clustal X (1.83), MegAlign, GeneDoc 3.2, and Mega 5.0. Results A total of 38 347 mosquitoes were collected and the main species was Culex tritaeniorhynchus. Thirteen JEV strains were isolated and identified. The whole genomes of the 13 strains were sequenced. Phylogenetic analysis based on the whole genome sequences of other 5 genotypes of JEV and those JEV strains found in other years revealed that the JEV strains isolated in 2001, 2003, 2005, and 2007 belonged to genotypeⅠ and those isolated in 2004 and 2006 belonged to genotypeⅢ.Conclusion Two genotypes of JEV (Ⅰ and Ⅲ) were co-prevalent in Shanghai, China.
Objective To carry out the etiological investigation of Japanese encephalitis virus (JEV) in Anhui province, China, and to determine the genotype and molecular characteristics of the JEV. Methods Mosquito samples were collected using mosquito lamps in Fuyang, Huainan, and Anqing, Anhui province in August 2010 and then used for virus isolation by tissue culture. The obtained virus isolates were identified by serological and molecular biological methods. Homology and phylogenetic analysis were performed on the viral sequences by bioinformatics. Results A total of 7651 mosquitoes (3 species, 3 genera) were collected, and 11 virus strains were isolated from the mosquitoes. The newly isolated JEV strains had the highest homology with genotype Ⅰ JEV (96.8%-99.5% nucleotide homology and 97.8%-100% amino acid homology) and thus were identified as genotypeⅠ JEV. Conclusion GenotypeⅠ JEV strains were first isolated in Anhui province, China, and they have a close phylogenetic association with JEV strains isolated from Shanghai and Zhejiang province, China.
Objective To investigate the distribution profiles of arboviruses in Jiangxi province, China. Methods Mosquito samples were collected using mosquito lamps at 8 sites in Jiangxi in the summers of 2008 and 2009 and then used for virus isolation by tissue culture. The obtained virus isolates were identified by serological and molecular biological methods. Homology and phylogenetic analysis was performed on the sequences of the isolates by bioinformatics. Results A total of 11 916 mosquitoes (3 species, 3 genera) were collected in 2008, and 5905 mosquitoes (5 species, 4 genera) were collected in 2009. Four virus strains were isolated from the mosquitoes and were all identified as Japanese encephalitis virus (JEV). All the JEV strains belong to genotypeⅠ, according to the homology and phylogenetic analysis. Conclusion GenotypeⅠ JEV strains were isolated from mosquitoes collected in Jiangxi province, China. And they have a close phylogenetic association with JEV strains from Shanghai and Zhejiang province, China.
Objective To investigate mosquito-borne Liaoning virus (LNV) in Xinjiang Uygur Autonomous Region, China, and to provide evidence for prevention and control of arbovirus diseases. Methods Mosquitoes and ticks were collected from Xinjiang in 2011 and then used for virus isolation by cell culture. The isolated viruses were further analyzed by molecular biology techniques. Results The viruses in the mosquitoes collected from Kashi, Xinjiang and ticks collected from Yili, Xinjiang were subject to PCR using the specific primer for LNV, and the results showed that the positive rate of LNV in mosquitoes was 23.0% (87/379) and that no LNV was found in ticks. Nineteen virus strains were isolated from C6/36 cell cultures of mosquitoes and were identified as LNV. Conclusion Several LNV strains were isolated from mosquitoes collected in Kashi, Xinjiang in 2011, while no LNV was found in ticks collected in Yili, Xinjiang in 2011. Further research on LNV pathogenicity for humans and animals is recommended in Xinjiang, China.